Nextflow workflow report

[curious_shaw] (resumed run)

Workflow execution completed successfully. One or more tasks reported an error condition.
Run times
17-Jul-2022 08:20:28 - 18-Jul-2022 09:38:22 (duration: 1d 1h 17m 54s)
  821 succeeded  
  2424 cached  
  10 ignored  
  10 failed  
Nextflow command
nextflow run nf-core/rnaseq -r 3.8.1 -profile singularity --fasta /storage/clstacy/rnaseq/canary/reference/GCF_007115625.1_cibio_Scana_2019_genomic.fna.gz --gtf /storage/clstacy/rnaseq/canary/reference/GCF_007115625.1_cibio_Scana_2019_genomic.gtf.gz --gencode --outdir /storage/clstacy/rnaseq/canary/nf/output/first --input /storage/clstacy/rnaseq/canary/nf/input/nfinput_withIDs.csv --email clstacy@uark.edu --featurecounts_group_type gbkey --aligner star_rsem --pseudo_aligner salmon --save_reference -resume
CPU-Hours
2'265.2 (73.1% cached, 21.2% failed)
Launch directory
/scrfs/storage/clstacy/rnaseq/canary/nf
Work directory
/scrfs/storage/clstacy/rnaseq/canary/nf/work
Project directory
/home/clstacy/.nextflow/assets/nf-core/rnaseq
Script name
main.nf
Script ID
6b989c60f8b09b62bd16a252d522ee2e
Workflow session
7d34c6c7-ea3a-4e3b-83ff-d7ba4ee8c703
Workflow repository
https://github.com/nf-core/rnaseq, revision 3.8.1 (commit hash 89bf536ce4faa98b4d50a8ec0a0343780bc62e0a)
Workflow profile
singularity
Nextflow version
version 22.04.4, build 5706 (19-06-2022 20:51 UTC)

Resource Usage

These plots give an overview of the distribution of resource usage for each process.

CPU

Memory

Job Duration

I/O

Tasks

This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.

(tasks table omitted because the dataset is too big)